CDS

Accession Number TCMCG017C11880
gbkey CDS
Protein Id OMO98787.1
Location complement(join(58169..59497,59691..59768,60779..61570))
GeneID InterPro:IPR007504
Organism Corchorus olitorius
locus_tag COLO4_13701

Protein

Length 732aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01015254.1
Definition H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 [Corchorus olitorius]
Locus_tag COLO4_13701

EGGNOG-MAPPER Annotation

COG_category D
Description H ACA ribonucleoprotein complex non-core subunit
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14763        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000154        [VIEW IN EMBL-EBI]
GO:0000454        [VIEW IN EMBL-EBI]
GO:0000491        [VIEW IN EMBL-EBI]
GO:0000493        [VIEW IN EMBL-EBI]
GO:0001522        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005732        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009894        [VIEW IN EMBL-EBI]
GO:0009895        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010638        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016074        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0031118        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031329        [VIEW IN EMBL-EBI]
GO:0031330        [VIEW IN EMBL-EBI]
GO:0032204        [VIEW IN EMBL-EBI]
GO:0032206        [VIEW IN EMBL-EBI]
GO:0032210        [VIEW IN EMBL-EBI]
GO:0032212        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033044        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043085        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043487        [VIEW IN EMBL-EBI]
GO:0043489        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044093        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050790        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051054        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051130        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051338        [VIEW IN EMBL-EBI]
GO:0051347        [VIEW IN EMBL-EBI]
GO:0051972        [VIEW IN EMBL-EBI]
GO:0051973        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0065009        [VIEW IN EMBL-EBI]
GO:0070034        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090669        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1902369        [VIEW IN EMBL-EBI]
GO:1904356        [VIEW IN EMBL-EBI]
GO:1904358        [VIEW IN EMBL-EBI]
GO:1905323        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000278        [VIEW IN EMBL-EBI]
GO:2000573        [VIEW IN EMBL-EBI]
GO:2001252        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTAGGGTTTATTCCTGATCCTTCCCCTGAAGAAGATACCAATCAAGTTCCAAAACTCAAAAATTTCAAAGACCCTTCTGACTTTATTGACCCTAAAACCAACGATTTAACCTTTGCCGATTCCTTTCTTGATTTCGACTCTATAAAAGAGTGGTTTGAAGATAACCCAAGTTTAGACAGATTTTGTTTAGAGGAGAGTGAATTTGGGGATATTAAGAAGGGTATGGAGATAGGTATAACCCATGTTAGTGACCCCAATGTTGCTGGGTTCAAGCCGATTGATGGTGGGTCTGAGCTGGTTGGAGGTATCTCAGGTTGTCCAGTGAAGGTGGAAGGAGAGGATTTCAAAGCAGCAGTGAAGGTGGAAGAAGAGGATTTCAAACCAGGAGGGAAGTTGGGTTCGTCTATTGCGGAAGAGTTGGAGAGGGTTAGTTTGGTGCGTATAAAATGTGAAGAGGACGGGAATGGAGAAAAAGTGAAGGTGGAGAGCAAAACAGAGGTGGATGGAGCATATGAGCTTGAAGAAGGTGAAATAGAGGACTTTGGTGGAGAGATGGGCGTTGATGGAACTGATAATTCTGACTATGATGAAGGGGATGAGGAGACTGATGATGAAGAGGGCGAAAGGGATGAGCATACTTATGAAGAGGATGAAGAGGCTAAGGAGACAAACGAAATTTTCCGCAGGTCTGGTTTTGAATTTGAAGATGTAGATGTAGATGACGAGGATGATGATTATGATGATGCTGGTGATACGAGAGGACCTATCAAGTCAAAGAATGAATTTCAGACTCTCCCTCCAGTTCCACAAGTGGATGTTACATTGCAGCCCCACCACCAGACGCTGCCTGTTGGAGTTGTTCTGTCGATTATTGGTACCAAAGTGATTGTTGAAGGGAGAGAGAAGCACAACCCACTGAATGAAGGTTCAATTCTCTGGATAACAGTAGACAGGTCACCACTGGGATTGGTGGATGAAATTTTTGGACCTGTAACAAACCCCTACTATGTAGTGCGATATAATTCAGAAATTGAAGTCCCTGCTGGGATCCATGAAGGCACTTCAATCTCTTTTGTCCCAGAATTTGCTAATCATGTTCTCAATGACAACAATCTTTACAAGAAAGGGTATGATGCATCTGGTGAGAATGATGAGGAATTATCTGATTATGCTGAGTTTTCAGATGATGAAAAAGAGGCCGAGTACAAGAAGATGCTAAAAATGTCAAAGAGAGGTACGAATGACCAGAAAGGCGGAAATAGGAAAAGCAATAAAAAGAAGGTTAAAAGTAGGGATGGGGCTTGGAAAAATGGTGGTAATTCAGCGCAGCAAACATCAACAACAGTTGGTCAGCTTGCACCTGATGAGAATGAACATGATTTCTCCACCGTTTCAGCATCTTTGGATTCATGTTCTCCCATAGGAAGACAAAATTTTGTCGGTGGATCTAACTTTGTTCAACCATTTTCAGTCATGCCACAATCTTCTGGCATTATTCCATCTTCAAATGGAGTTTGGACAAATGGGATGCCGGGCCAGGAGCCACAAAATCCTATCTTTCCCAACAGGTTTCCTGCAGAAGGTATGACAATGCTCTCACAAAATTATCAACAGCAGCCTTTTCCTTTGCCAACCCCAGCAATGCCTATCCCATACCAGCAGCAGCAGTTTATTTCTTGTATGAATACACTTCCGGGTATGTTGCCTGGTGGCCAGCCAAATTTATTTTCTGGACCAGCCTATGCACCTTGGCTGGGGATTGGAGGTCAAAATGGCTTTGGCCAAACATCTGGGGTGGGCATGCAGGGCCAACAGCTCCTAAGTGCAGTACACAGTATGTTGGCAAATGGAGCAATGGCAGATGGGAATAGTAATGTGCAACCCAAAGGTGTTCATGGAAACTTTGAAACATCCCAGAACGTGAACATGGGTAATGGCTTTAGCCAAACCACATTTGGGGCAGGCATGCAGGGCCAACAGCTCCTAAGTGCAGTACAAGGTATCTTGGCTAGTGGAGCAATGGCGGATGGGAATTGTAATGTGCAACCTGGAGGTGTTCCAGACAACTTTGAATCATACCAGAACTTTAACACGGGTGCATCATCAGGTCGTGGAAAAAGACCATTTCATAGAGGTAGAGGTCGAGGTCGTGGTCGTGGTTGCTTTACAGGCAGAAGAGGTCATCAGCAATCCTAA
Protein:  
MVGFIPDPSPEEDTNQVPKLKNFKDPSDFIDPKTNDLTFADSFLDFDSIKEWFEDNPSLDRFCLEESEFGDIKKGMEIGITHVSDPNVAGFKPIDGGSELVGGISGCPVKVEGEDFKAAVKVEEEDFKPGGKLGSSIAEELERVSLVRIKCEEDGNGEKVKVESKTEVDGAYELEEGEIEDFGGEMGVDGTDNSDYDEGDEETDDEEGERDEHTYEEDEEAKETNEIFRRSGFEFEDVDVDDEDDDYDDAGDTRGPIKSKNEFQTLPPVPQVDVTLQPHHQTLPVGVVLSIIGTKVIVEGREKHNPLNEGSILWITVDRSPLGLVDEIFGPVTNPYYVVRYNSEIEVPAGIHEGTSISFVPEFANHVLNDNNLYKKGYDASGENDEELSDYAEFSDDEKEAEYKKMLKMSKRGTNDQKGGNRKSNKKKVKSRDGAWKNGGNSAQQTSTTVGQLAPDENEHDFSTVSASLDSCSPIGRQNFVGGSNFVQPFSVMPQSSGIIPSSNGVWTNGMPGQEPQNPIFPNRFPAEGMTMLSQNYQQQPFPLPTPAMPIPYQQQQFISCMNTLPGMLPGGQPNLFSGPAYAPWLGIGGQNGFGQTSGVGMQGQQLLSAVHSMLANGAMADGNSNVQPKGVHGNFETSQNVNMGNGFSQTTFGAGMQGQQLLSAVQGILASGAMADGNCNVQPGGVPDNFESYQNFNTGASSGRGKRPFHRGRGRGRGRGCFTGRRGHQQS